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Getting Started

  • Installation instructions
    • 1. Install miniconda
    • 2. Install Git
    • 3. Clone the repository
    • 4. Install required packages
  • Beginner’s guide
    • The tutorial data
      • 1. Download tutorial data
      • 2. Audio recordings
      • 3. Field deployments sheet
      • 4. Target species list
    • Data preparation
      • Configure audio path and timezone
      • Move input files to the pamflow folder
      • Run the data preparation pipeline
    • Quality control
      • Run the quality control pipeline
      • Check deployment timeline
      • Check deployment locations
      • Check survey effort
      • Timelapses
    • Species detection
      • Detection outputs
      • Audio segments
      • Data annotation
    • Wrap-up

Diving deeper

  • Workflow structure and execution
    • Overview
    • Running the workflow
    • Pipeline details
      • 1. Data preparation
      • 2. Quality control
      • 3. Species detection
      • 4. Acoustic indices
      • 5. Graphical soundscape
  • Expert’s Guide
    • Create a custom pipeline
      • 1. Generate the Pipeline
      • 2. Define your Logic in nodes.py
      • 3. Connect the Nodes in pipeline.py
      • 4. Register the Pipeline
      • 5. Verify and Run
      • Troubleshooting Tip: Check your Nodes
    • Multi‐Season Configuration
      • Directory Structure
      • 1. Set the Default Output Path
      • 2. Override per Season
      • 3. Adjust Season Configuration
      • 3. Configure Each Season
        • Field deployment spreadsheet
        • Update the catalog
        • Update the audio directory
      • 4. Run using environment

Data standards

  • Input data standards
    • File organization
    • Field deployment sheet
    • Target species
  • Output data standards
    • Deployments
    • Media
    • Observations
    • References

Getting Involved

  • Contributing guidelines
    • Table of Contents
    • Getting Started
    • How to Contribute
    • Code Standards
    • Git Commit Names
    • Testing
    • Pull Request Process
    • Reporting Issues
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